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Registro Completo |
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Biblioteca(s): |
Embrapa Soja. |
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Data corrente: |
07/03/2014 |
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Data da última atualização: |
09/04/2015 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
ROSSATO, R.; PRETE, C. E. C.; CASTRO, C. de; TOMM, G. O.; LEITE, R. S.; MANDARINO, J. M. G.; ARAÚJO, P. M. de; CARVALHO, C. G. P. de. |
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Afiliação: |
ROBERTA ROSSATO, UEL; CÁSSIO EGÍDIO CAVENAGHI PRETE, UEL; CÉSAR DE CASTRO, CNPSO; GILBERTO OMAR TOMM, CNPT; RODRIGO SANTOS LEITE, CNPSO; JOSÉ MARCOS GONTIJO MANDARINO, CNPSO; PEDRO MÁRIO DE ARAÚJO, IAPAR; CLAUDIO GUILHERME PORTELA DE CARVALHO, CNPSO. |
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Título: |
Predicting rapeseed oil content with near-infrared spectroscopy. |
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Ano de publicação: |
2013 |
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Fonte/Imprenta: |
Pesquisa Agropecuária Brasileira, Brasília, DF, v. 48, n. 12, p. 1601-1604, dez. 2013. |
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ISSN: |
0100-204X |
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DOI: |
10.1590/S0100-204X2013001200010 |
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Idioma: |
Inglês |
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Conteúdo: |
ABSTRACT – The objective of this work was to establish a calibration equation and to estimate the efficiency of near?infrared reflectance (NIR) spectroscopy for evaluating rapeseed oil content in Southern Brazil. Spectral data from 124 half?sib families were correlated with oil contents determined by the chemical method. The accuracy of the equation was verified by coefficient of determination (R2) of 0.92, error of calibration (SEC) of 0.78, and error of performance (SEP) of 1.22. The oil content of ten genotypes, which were not included in the calibration with NIR, was similar to the one obtained by the standard chemical method. NIR spectroscopy is adequate to differentiate oil content of rapeseed genotypes. RESUMO – O objetivo deste trabalho foi estabelecer uma equação de calibração e estimar a eficiência da espectroscopia de reflectância no infravermelho próximo (NIR), para avaliar o teor de óleo em sementes de canola, no Sul do Brasil. Informações espectrais de 124 famílias de meio?irmãos foram correlacionadas com os teores de óleo determinados pelo método químico. A precisão da equação foi verificada por coeficiente de determinação (R2) de 0,92, erro de calibração (SEC) de 0,78 e erro de desempenho (SEP) de 1,22. O teor de óleo de dez genótipos, não incluídos na calibração por NIR, foi similar ao obtido pelo método químico padrão. A espectroscopia NIR é adequada para diferenciar teores de óleo de genótipos de canola. |
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Thesagro: |
Colza; Oleo vegetal; Planta oleaginosa. |
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Thesaurus Nal: |
Rapeseed oil. |
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Categoria do assunto: |
F Plantas e Produtos de Origem Vegetal |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/101279/1/rossato.2013.pdf
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Marc: |
LEADER 02301naa a2200277 a 4500
001 1981855
005 2015-04-09
008 2013 bl uuuu u00u1 u #d
022 $a0100-204X
024 7 $a10.1590/S0100-204X2013001200010$2DOI
100 1 $aROSSATO, R.
245 $aPredicting rapeseed oil content with near-infrared spectroscopy.$h[electronic resource]
260 $c2013
520 $aABSTRACT – The objective of this work was to establish a calibration equation and to estimate the efficiency of near?infrared reflectance (NIR) spectroscopy for evaluating rapeseed oil content in Southern Brazil. Spectral data from 124 half?sib families were correlated with oil contents determined by the chemical method. The accuracy of the equation was verified by coefficient of determination (R2) of 0.92, error of calibration (SEC) of 0.78, and error of performance (SEP) of 1.22. The oil content of ten genotypes, which were not included in the calibration with NIR, was similar to the one obtained by the standard chemical method. NIR spectroscopy is adequate to differentiate oil content of rapeseed genotypes. RESUMO – O objetivo deste trabalho foi estabelecer uma equação de calibração e estimar a eficiência da espectroscopia de reflectância no infravermelho próximo (NIR), para avaliar o teor de óleo em sementes de canola, no Sul do Brasil. Informações espectrais de 124 famílias de meio?irmãos foram correlacionadas com os teores de óleo determinados pelo método químico. A precisão da equação foi verificada por coeficiente de determinação (R2) de 0,92, erro de calibração (SEC) de 0,78 e erro de desempenho (SEP) de 1,22. O teor de óleo de dez genótipos, não incluídos na calibração por NIR, foi similar ao obtido pelo método químico padrão. A espectroscopia NIR é adequada para diferenciar teores de óleo de genótipos de canola.
650 $aRapeseed oil
650 $aColza
650 $aOleo vegetal
650 $aPlanta oleaginosa
700 1 $aPRETE, C. E. C.
700 1 $aCASTRO, C. de
700 1 $aTOMM, G. O.
700 1 $aLEITE, R. S.
700 1 $aMANDARINO, J. M. G.
700 1 $aARAÚJO, P. M. de
700 1 $aCARVALHO, C. G. P. de
773 $tPesquisa Agropecuária Brasileira, Brasília, DF$gv. 48, n. 12, p. 1601-1604, dez. 2013.
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Registro original: |
Embrapa Soja (CNPSO) |
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Registro Completo
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Biblioteca(s): |
Embrapa Cerrados. |
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Data corrente: |
24/08/2018 |
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Data da última atualização: |
20/11/2018 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Circulação/Nível: |
A - 1 |
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Autoria: |
SOUZA, L. M. de; SANTOS, L. H. B. dos; ROSA, J. R. B. F.; SILVA, C. C. da; MANTELLO, C. C.; CONSON, A. R. O.; SCALOPPI JUNIOR, E. J.; FIALHO, J. de F.; MORAES, M. L. T. de; GONÇALVES, P. de S.; MARGARIDO, G. R. A.; GARCIA, A. A. F.; LE GUEN, V.; SOUZA, A. P. de. |
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Afiliação: |
LIVIA M. DE SOUZA, UNICAMP; LUCIANO H. B. DOS SANTOS, UNICAMP; JOÃO R. B. F. ROSA, USP/ESALQ; CARLA C. DA SILVA, UNICAMP; CAMILA C. MANTELLO, UNICAMP; ANDRE R. O. CONSON, UNICAMP; ERIVALDO J. SCALOPPI JUNIOR, IAC; JOSEFINO DE FREITAS FIALHO, CPAC; MARIO LUIZ T. DE MORAES, UNESP; PAULO DE S. GONÇALVES, IAC; GABRIEL R. A. MARGARIDO, USP/ESALQ; ANTONIO A. F. GARCIA, USP/ESALQ; VINCENT LE GUEN, CIRAD; ANETE P. DE SOUZA, UNICAMP. |
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Título: |
Linkage disequilibrium and population structure in wild and cultivated populations of rubber tree (Hevea brasiliensis). |
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Ano de publicação: |
2018 |
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Fonte/Imprenta: |
Frontiers in Plant Science, v. 9, article 815, 03 July 2018. |
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DOI: |
https://doi.org/10.3389/fpls.2018.00815 |
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Idioma: |
Inglês |
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Conteúdo: |
Abstract: Among rubber tree species, which belong to the Hevea genus of the Euphorbiaceae family, Hevea brasiliensis (Willd. ex Adr.de Juss.) Muell. Arg. is the main commercial source of natural rubber production worldwide. Knowledge of the population structure and linkage disequilibrium (LD) of this species is essential for the efficient organization and exploitation of genetic resources. Here, we obtained single-nucleotide polymorphisms (SNPs) using a genotyping-by-sequencing (GBS) approach and then employed the SNPs for the following objectives: (i) to identify the positions of SNPs on a genetic map of a segregating mapping population, (ii) to evaluate the population structure of a germplasm collection, and (iii) to detect patterns of LD decay among chromosomes for future genetic association studies in rubber tree. A total of 626 genotypes, including both germplasm accessions (368) and individuals from a genetic mapping population (254), were genotyped. A total of 77,660 and 21,283 SNPs were detected by GBS in the germplasm and mapping populations, respectively. The mapping population, which was previously mapped, was constructed with 1,062 markers, among which only 576 SNPs came from GBS, reducing the average interval between two adjacent markers to 4.4 cM. SNPs from GBS genotyping were used for the analysis of genetic structure and LD estimation in the germplasm accessions. Two groups, which largely corresponded to the cultivated and wild populations, were detected using STRUCTURE and via principal coordinate analysis. LD analysis, also using the mapped SNPs, revealed that non-random associations varied along chromosomes, with regions of high LD interspersed with regions of low LD. Considering the length of the genetic map (4,693 cM) and the mean LD (0.49 for cultivated and 0.02 for wild populations), a large number of evenly spaced SNPs would be needed to perform genome-wide association studies in rubber tree, and the wilder the genotypes used, the more difficult the mapping saturation. MenosAbstract: Among rubber tree species, which belong to the Hevea genus of the Euphorbiaceae family, Hevea brasiliensis (Willd. ex Adr.de Juss.) Muell. Arg. is the main commercial source of natural rubber production worldwide. Knowledge of the population structure and linkage disequilibrium (LD) of this species is essential for the efficient organization and exploitation of genetic resources. Here, we obtained single-nucleotide polymorphisms (SNPs) using a genotyping-by-sequencing (GBS) approach and then employed the SNPs for the following objectives: (i) to identify the positions of SNPs on a genetic map of a segregating mapping population, (ii) to evaluate the population structure of a germplasm collection, and (iii) to detect patterns of LD decay among chromosomes for future genetic association studies in rubber tree. A total of 626 genotypes, including both germplasm accessions (368) and individuals from a genetic mapping population (254), were genotyped. A total of 77,660 and 21,283 SNPs were detected by GBS in the germplasm and mapping populations, respectively. The mapping population, which was previously mapped, was constructed with 1,062 markers, among which only 576 SNPs came from GBS, reducing the average interval between two adjacent markers to 4.4 cM. SNPs from GBS genotyping were used for the analysis of genetic structure and LD estimation in the germplasm accessions. Two groups, which largely corresponded to the cultivated and wild populations, were detected usin... Mostrar Tudo |
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Thesagro: |
Comportamento de Variedade; Hevea Brasiliensis; População de Planta; Seringueira; Variação Genética. |
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Categoria do assunto: |
G Melhoramento Genético |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/181926/1/DL-Hevea-brasiliensis-Livia-public-Frontiers-3.07.2018apagar.pdf
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Marc: |
LEADER 03139naa a2200349 a 4500
001 2094508
005 2018-11-20
008 2018 bl uuuu u00u1 u #d
024 7 $ahttps://doi.org/10.3389/fpls.2018.00815$2DOI
100 1 $aSOUZA, L. M. de
245 $aLinkage disequilibrium and population structure in wild and cultivated populations of rubber tree (Hevea brasiliensis).$h[electronic resource]
260 $c2018
520 $aAbstract: Among rubber tree species, which belong to the Hevea genus of the Euphorbiaceae family, Hevea brasiliensis (Willd. ex Adr.de Juss.) Muell. Arg. is the main commercial source of natural rubber production worldwide. Knowledge of the population structure and linkage disequilibrium (LD) of this species is essential for the efficient organization and exploitation of genetic resources. Here, we obtained single-nucleotide polymorphisms (SNPs) using a genotyping-by-sequencing (GBS) approach and then employed the SNPs for the following objectives: (i) to identify the positions of SNPs on a genetic map of a segregating mapping population, (ii) to evaluate the population structure of a germplasm collection, and (iii) to detect patterns of LD decay among chromosomes for future genetic association studies in rubber tree. A total of 626 genotypes, including both germplasm accessions (368) and individuals from a genetic mapping population (254), were genotyped. A total of 77,660 and 21,283 SNPs were detected by GBS in the germplasm and mapping populations, respectively. The mapping population, which was previously mapped, was constructed with 1,062 markers, among which only 576 SNPs came from GBS, reducing the average interval between two adjacent markers to 4.4 cM. SNPs from GBS genotyping were used for the analysis of genetic structure and LD estimation in the germplasm accessions. Two groups, which largely corresponded to the cultivated and wild populations, were detected using STRUCTURE and via principal coordinate analysis. LD analysis, also using the mapped SNPs, revealed that non-random associations varied along chromosomes, with regions of high LD interspersed with regions of low LD. Considering the length of the genetic map (4,693 cM) and the mean LD (0.49 for cultivated and 0.02 for wild populations), a large number of evenly spaced SNPs would be needed to perform genome-wide association studies in rubber tree, and the wilder the genotypes used, the more difficult the mapping saturation.
650 $aComportamento de Variedade
650 $aHevea Brasiliensis
650 $aPopulação de Planta
650 $aSeringueira
650 $aVariação Genética
700 1 $aSANTOS, L. H. B. dos
700 1 $aROSA, J. R. B. F.
700 1 $aSILVA, C. C. da
700 1 $aMANTELLO, C. C.
700 1 $aCONSON, A. R. O.
700 1 $aSCALOPPI JUNIOR, E. J.
700 1 $aFIALHO, J. de F.
700 1 $aMORAES, M. L. T. de
700 1 $aGONÇALVES, P. de S.
700 1 $aMARGARIDO, G. R. A.
700 1 $aGARCIA, A. A. F.
700 1 $aLE GUEN, V.
700 1 $aSOUZA, A. P. de
773 $tFrontiers in Plant Science$gv. 9, article 815, 03 July 2018.
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